Rivanna Maintenance: March 11, 2020

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You may continue to submit jobs until the maintenance period begins, but if the system determines your job will not have time to finish, it will not start until Rivanna is returned to service.

Rivanna is expected to return to service later in the day.

The following software modules will be removed from Rivanna during the maintenance period (please use the suggested newer versions):

  • gcc/5.4.0 & toolchains -> 7.1.0
    • All modules that depend on gcc/5.4.0 will be available under gcc/7.1.0.
    • The only exception is cushaw3/3.0.3. Please contact us if you need to use it.
  • pgi/19.7 & toolchains -> 19.10
    • All modules that depend on pgi/19.7 will be available under pgi/19.10.
  • anaconda/5.2.0-py2.7 -> 2019.10-py2.7
    • All modules that depend on anaconda/5.2.0-py2.7 will be available under anaconda/2019.10-py2.7.
  • tensorflow/1.6.0-py27, -py36 -> 1.12.0, 2.0.0, or 2.1.0
    • If you must use version 1.6.0, please pull the image from our repository on Singularity Library.
  • singularity/3.1.1 -> 3.5.2
  • boost/1.66.0 -> 1.68.0
  • julia/1.0.2, 1.0.3 -> 1.3.1
  • cushaw3/3.0.3 - no replacement

The following upgrades will take place during the maintenance period:

  • JupyterLab v1.2.6
  • Python 3.7 Jupyter kernel - based on anaconda/2019.10-py3.7
    • The previous “Python 3” kernel (based on anaconda/5.2.0-py3.6) has been renamed as “Python 3.6”.
  • anaconda/2019.10-py2.7, -py3.7
  • gcc/9.2.0 & toolchains
  • singularity/3.5.2 - now default version
  • gurobi/9.0.1
  • tensorflow/2.1.0-py37 - Singularity container module & Jupyter kernel
  • julia/1.3.1 - module & Jupyter kernel
  • ansys/2020r1
  • samtools/1.10
  • rust/1.41.0
  • cmake/1.16.5

New tools:

  • LibreOffice - through FastX Web desktop environment
  • pytorch/1.4.0 - Singularity container module & Jupyter kernel
  • openfoam 7 (version 1909) - open-source CFD software
  • goolfc/6.5.0_3.1.4_10.1.168 - GOOLF toolchain (GCC + OpenMPI + OpenBLAS + ScaLAPACK + FFTW) with CUDA support
  • atom/1.43.0 - Atom text editor
  • rclone/1.51.0 - Rclone for cloud file syncing (supports Google Drive)
  • nodejs/12.14.1 - Node.js JavaScript runtime environment
  • ninja/1.10.0-py3.6 - Ninja build system
  • meson/0.53.1-py3.6 - Meson build system
  • gtk+/3.24.14 - GTK+ 3 libraries for GUI applications
  • fribidi/1.0.8 - Free Implementation of the Unicode Bidirectional Algorithm
  • atk/2.28.1 - Accessibility Toolkit
  • tree/1.8.0 - Tree structure of file system
  • gnupg/2.2.19 - GnuPG encrypt and sign data