/tag/tools
BART Web
BART (Binding Analysis for Regulation of Transcription) Web Working with researchers in the Zang Lab in the Center for Public Health Genomics
(CPHG), RC helped launch BARTweb,
an interactive web-based tool for users to analyze their Genelist or ChIP-seq datasets. BARTweb is a containerized
Flask front-end (written in Python) that ingests files and submits them to a more robust Python-based genomics pipeline
running on Rivanna, UVA’s high performance computing cluster (HPC). This architecture – of a public web application that
uses a supercomputer to process data – is a new model for UVA, and one that eases the learning curve for researchers who
Bioinformatics Resources and UVA HPC
The UVA research community has access to numerous bioinformatics software installed directly or available through the bioconda Python modules.
Click here for a comprehensive list of currently-installed bioinformatics software.
Popular Bioinformatics Software Below are some popular tools and useful links for their documentation and usage:
Tool Version Description Useful Links BEDTools 2.26.0 BEDTools utilities allow one to intersect, merge, count, complement, and shuffle genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF. Homepage Tutorial BLAST+ 2.7.1 BLAST+ is a suite of command-line tools that offers applications for BLAST search, BLAST database creation/examination, and sequence filtering.
